孔雷 照片

孔雷

高级工程师

所属大学: 北京大学

所属学院: 生命科学学院

邮箱:
kongl@mail.cbi.pku.edu.cn

个人主页:
http://www.bio.pku.edu.cn/homes/Index/news_cont_jl/17/35.html

个人简介

教育经历: 2001 - 2007,理学博士,生物信息,北京大学 1997 - 2001,理学学士,生物化学与分子生物学,山东大学 工作经历: 2007 - 2012,工程师,北京大学 2012 - 今,高级工程师,北京大学 2018 - 今,人类遗传资源中心 主任

研究领域

基因表达调控网络、生物大数据可视化、生命科学领域高性能计算

近期论文

1. Bu D, Luo H, Huo P, Wang Z, Zhang S, He Z, Wu Y, Zhao L, Liu J, Guo J, Fang S, Cao W, Yi L, Zhao Y, Kong L. KOBAS-i: intelligent prioritization and exploratory visualization of biological functions for gene enrichment analysis. Nucleic Acids Res. 2021 Jun 4:gkab447. doi: 10.1093/nar/gkab447. PMID: 34086934. 2. Zhu Q, Shao Y, Wang Z, Chen X, Li C, Liang Z, Jia M, Guo Q, Zhao H, Kong L, Zhang L. DeepS: A web server for image optical sectioning and super resolution microscopy based on a deep learning framework. Bioinformatics. 2021 Mar 2:btab144. doi: 10.1093/bioinformatics/btab144. PMID: 33677518. (并列通信作者) 3. Wang M., Kong L. pblat: a multithread blat algorithm speeding up aligning sequences to genomes. BMC Bioinformatics. 2019 Jan 15;20(1):28. doi: 10.1186/s12859-019-2597-8. 4. Ai C., Kong L. CGPS: A machine learning-based approach integrating multiple gene set analysis tools for better prioritization of biologically relevant pathways. J Genet Genomics. 2018 Sep 13. pii: S1673-8527(18)30163-2. doi: 10.1016/j.jgg.2018.08.002. 5. Kong L, Cheng L, Fan LY, Zhao M, Qu H. IQdb: an intelligence quotient score-associated gene resource for human intelligence. Database (Oxford). 2013 Sep 11;2013:bat063. doi: 10.1093/database/bat063. PubMed PMID: 24030781; PubMed Central PMCID: PMC3770929. 6. Wang J, Kong L, Gao G, Luo J. A brief introduction to web-based genome browsers. Brief Bioinform. 2013 Mar;14(2):131-43. doi: 10.1093/bib/bbs029. Review. PubMed PMID: 22764121. 7. Kong L, Wang J, Zhao S, Gu X, Luo J, Gao G. ABrowse--a customizable next-generation genome browser framework. BMC Bioinformatics. 2012 Jan 5;13:2.doi: 10.1186/1471-2105-13-2. PubMed PMID: 22222089; PubMed Central PMCID:PMC3265404. 8. Xie C, Mao X, Huang J, Ding Y, Wu J, Dong S, Kong L, Gao G, Li CY, Wei L. KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W316-22. doi: 10.1093/nar/gkr483. PubMed PMID: 21715386; PubMed Central PMCID: PMC3125809. 9. Wang J, Kong L, Zhao S, Zhang H, Tang L, Li Z, Gu X, Luo J, Gao G. Rice-Map: a new-generation rice genome browser. BMC Genomics. 2011 Mar 30;12:165. doi:10.1186/1471-2164-12-165. PubMed PMID: 21450055; PubMed Central PMCID:PMC3072960.(并列第一作者) 10. Kong L, Zhang Y, Ye ZQ, Liu XQ, Zhao SQ, Wei L, Gao G. CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W345-9. PubMed PMID: 17631615; PubMed Central PMCID: PMC1933232.