Plant signaling, metabolism and molecular networks

Zhu, M., Zhang, T., Ji, W., Geng, S., Silva-Sanchez, C., Song, W., Assmann, S.M., Harmon, A., Chen, S. (2016) Redox regulation of a stress hormone-activated serine/threonine protein kinase of Brassica napus. Journal of Experimental Botany (submitted). Geng, S., Misra, B.B., de Armas, E., Huhman, D.V., Alborn, H.T., Sumner, L.W., Chen, S. (2016) Jasmonate-mediated stomatal closure under elevated CO2 revealed by time-resolved metabolomics. The Plant Journal doi: 10.1111/tpj.13296. Misra, B.B.§ Yin, Z., Geng, S., Armas, E.D., Chen, S. (2016) Metabolomic responses of Arabidopsis suspension cells to bicarbonate under light and dark conditions. Scientific Reports (in press). Lawrence, S. II, Parker, J., Chen, S (2016) Plant response to bacterial pathogens: A proteomics view. Agricultural Proteomics (G.H. Salekdeh ed.) 2, 203-225. Libault, M., Chen, S., eds. (2016) E-Book: Plant Single Cell Type Systems Biology. Lausanne: Frontiers Media. doi: 10.3389/978-2-88919-948-8. Libault, M., Chen, S. (2016) Plant single cell type systems biology. Frontiers in Plant Science 7:35. doi: 10.3389/fpls.2016.00035. Zhang, T., Schneider, J.D., Zhu, N., Chen, S. (2016) Identification of MAPK substrates using quantitative phosphoproteomics. Methods in Molecular Biology (volume on “Plant Pattern Recognition Receptors”) (in press) Mostafa, I., Zhu, N., Yoo, M.J., Balmant, K.M., Misra, B.B., Dufresne, C., Abou-Hashem, M., Chen, S., El-Domiaty, M. (2016) New nodes and edges in the glucosinolate molecular network revealed by proteomics and metabolomics of Arabidopsis myb28/29 and cyp79B2/B3. Journal of Proteomics 138, 1-19. doi: 10.1016/j.jprot.2016.02.012 (corresponding author). Yoo, M-J., Ma, T., Zhu, N., Liu, L., Harmon, A.C., Wang, Q., Chen, S. (2016) Genome-wide identification and expression analysis of the SnRK2 genes in Brassica napus guard cells. Plant Molecular Biology 91(1), 211-227. Misra, B.B., Armas, E.D., Chen, S. (2016) Differential metabolomic responses of PAMP-triggered immunity and effector-triggered immunity in Arabidopsis suspension cells. Metabolomics 12 (4), 1-15 doi: 10.1007/s11306-016-0984-y. Zhang, T., Zhu, M., Zhu, N., Strul, J.M., Dufresne, C., Harmon, A.C., Chen, S. (2016) Identification of thioredoxin targets in guard cell enriched epidermal peels using cysTMT proteomics. Journal of Proteomics 133, 48-53 doi: 10.1016/j.jprot.2015.12.008. Zhu, M., Jeon, B.W., Geng, S., Yu, Y., Balmant, K., Chen, S., Assmann, S.M. (2016) Preparation of epidermal peels and guard cell protopalsts for cellular, electrophysiological, and –omics assays of guard cell function. Methods in Molecular Biology 1363, 89-121 (doi: 10.1007/978-1-4939-3115-6_9). Balmant, K., Zhang, T., Chen, S. (2016) Protein phosphorylation and redox modification in stomatal guard cells. Frontiers in Physiology 7:26. doi: 10.3389/fphys.2016.00026. Zhou, X., Andrade, M.O., Teper, D., Zhang, T., Chen, S., Song, W., Wang, N. (2016) A phosphorylation switch on Lon protease determines the fate of bacterial type III secretion system in host” (reference number: NMICROBIOL-16071034), Nature Microbiology Li, H., Wang, Y., Ma, C., Gu, D., Nan, J., Chen, S. (2016) Overexpression of S-adenosyl-L-methionine synthetase2 from Sugar beet M14 increased Arabidopsis tolerance to salt and oxidative stress. Plant and Soil (submitted) Klee, S., Mostafa, I., Chen, S., Dufresne, C., Lehman, B.L., Sinn, J.P., Peter, K.A., McNellisa, T.W. (2016) An Erwinia amylovora yjeK mutant has numerous environmentally-dependent phenotypic and proteomic alterations. Journal of Bacteriology (submitted) Suo, J., Zhang, H., Zhao, Q., Song, B., Cao, J., Chen, S., Wang, T., Luo, J., Guo, L., Zhang, X., Ma, J., She, Y., Dai, S. (2016) Na2CO3-responsive photosynthetic and ROS scavenging mechanisms in chloroplasts of halophyte Puccinellia tenuiflora revealed by proteomics and phosphoproteomics. New Phytologist (submitted) Liu, L., Liu, H., Li, S., Zhang, X., Zhang, M., Zhu, N., Dufresne, C.P., Chen, S., Wang, Q. (2016) Regulation of BZR1 in fruit ripening revealed by iTRAQ proteomics analysis. Nature Scientific Reports (in press). Feng, B., Ma, S., Chen, S., Zhu, N., Zhang, S., Yu, B., Yu, Y., Chen, X., Dinesh-Kumar, S.P., Shan, L., He, P. (2016) Proteome-wide identification of protein poly(ADP-ribosyl)ation targets reveals an important role of DAWDLE in Arabidopsis immunity. The EMBO Journal (in press). Zhang, M., Koh, J., Liu, L., Shao, Z., Zhu, N., Dufresne, C.P., Chen, S., Wang, Q. (2016) Critical role of SlCOI1 dependent jasmonate pathway in AAL toxin induced PCD revealed by comparative proteomics. Scientific Reports 6, 28451 doi: 10.1038/srep28451. Wang, J., Yu, Q., Xiong, H., Wang, J., Chen, S., Yang, Z., Dai, S. (2016) Proteomic insight into the response of Arabidopsis chloroplasts to darkness. Plos One (in press) Ji, W., Li, S., Cong, R., Li, R., Qin, Z., Li, Y., Zhou, X., Chen, S., Li, J. (2016) Quantitative proteomics analysis 1 of soybean leaves and roots during the initial stage of salt stress. Frontiers in Plant Science (in press) Yu, J., Guo, H., Zhang, J., Zhao, Q., Liu, Y., Chen, S., Shi, L., Dai, S. (2016) The leaf color regulation mechanism in Chimera Hosta ‘Gold standard’ leaves revealed from proteomic analysis. International Journal of Molecular Sciences (in press) Meng, X., Zhao, Q., Jin, Y., Yu, J., Yin, Z., Chen, S., Dai, S. (2016) Chilling-responsive mechanisms in halophyte Puccinellia tenuiflora seedlings revealed from proteomics analysis. Journal of Proteomics (in press, http://dx.doi.org/10.1016/j.jprot.2016.04.038).