Urbaniak, MD. Martin, DMA Ferguson, MAJ. Global Quantitative SILAC Phosphoproteomics Reveals Differential Phosphorylation Is Widespread between the Procyclic and Bloodstream Form Lifecycle Stages of Trypanosoma brucei Journal Of Proteome Research 2013 12 2233-2244 Nelson, SA. Li, Z Newton, IP. Fraser, D Milne, RE. Martin, DMA. Schiffmann, D, Yang, X, Dormann, D, Weijer, CJ. Appleton, PL. Naethke, IS.Tumorigenic fragments of APC cause dominant defects in directional cell migration in multiple model systems Disease Models & Mechanisms 2012 5 940-947 Martin DMA Gigsaw - physical simulation of next-generation sequencing for education and outreach EMBnet Jounal 2012 18(1) 28-32 Potato Genome Sequencing Consortium Genome sequence and analysis of the tuber crop potato Nature 2011 475 189-194 van Koningsbruggen S, Gierlinski M, Schofield P, Martin DMA, Barton GJ, Ariyurek Y, den Dunnen JT, Lamond AI High-resolution whole-genome sequencing reveals that specific chromatin domains from most human chromosomes associate with nucleoli Molecular Biology of the Cell 2010 21(21) 3735-48. Martin DMA, Nett IRE, Vandermoere F, Barber JD, Morrice N and Ferguson MAJ Prophossi: Automating Expert Validation of Phosphopeptides from Tandem Mass Spectrometry Bioinformatics 2010 26 (17), 2153-2159 Nett IRE, Martin DMA, Miranda-Saavedra D, Lamont D, Barber JD, Mehlert A and Ferguson MAJ The phosphoproteome of bloodstream form Trypanonosoma brucei, causative agent of African Sleeping Sickness Molecular and Cellular Proteomics 2008 8(7) 1527-38 Waterhouse AM, Procter JB, Martin DMA, Clamp M and Barton GJ Jalview Version 2 - a multiple sequence alignment editor and analysis workbench Bioinformatics 2009 25 (9) 1189-1191; doi:10.1093/bioinformatics/btp033 Martin DMA, Miranda-Saavedra D and Barton GJ Kinomer v. 1.0: A database of systematically classified eukaryotic protein kinases Nucleic Acids Research 2009 37: D244-D250; doi:10.1093/nar/gkn834 Towler MC, Fogarty S, Hawley SA, Pan DA, Martin DMA, Morrice NA, McCarthy A, Galardo MN, Meroni SB, Cigorraga SB, Ashworth A, Sakamoto K and Hardie DG A novel short splice variant of the tumour suppressor LKB1 is required for spermiogenesis Biochem. J. 2008 416 1–14; doi:10.1042/BJ20081447 Overton IM, van Niekerk CA, Carter LG, Dawson A, Martin DM, Cameron S, McMahon SA, White MF, Hunter WN, Naismith JH, Barton GJ. TarO: a target optimisation system for structural biology. Nucleic Acids Res. 2008 36 W190-W196; doi:10.1093/nar/gkn141 Ghedin E, Wang S, Spiro D, Caler E, Zhao Q, Crabtree J, Allen JE, Delcher AL, Guiliano DB, Miranda-Saavedra D, Angiuoli SV, Creasy T, Amedeo P, Haas B, El-Sayed NM, Wortman JR, Feldblyum T, Tallon L, Schatz M, Shumway M, Koo H, Salzberg SL, Schobel S, Pertea M, Pop M, White O, Barton GJ, Carlow CK, Crawford MJ, Daub J, Dimmic MW, Estes CF, Foster JM, Ganatra M, Gregory WF, Johnson NM, Jin J, Komuniecki R, Korf I, Kumar S, Laney S, Li BW, Li W, Lindblom TH, Lustigman S, Ma D, Maina CV, Martin DMA, McCarter JP, McReynolds L, Mitreva M, Nutman TB, Parkinson J, Peregrín-Alvarez JM, Poole C, Ren Q, Saunders L, Sluder AE, Smith K, Stanke M, Unnasch TR, Ware J, Wei AD, Weil G, Williams DJ, Zhang Y, Williams SA, Fraser-Liggett C, Slatko B, Blaxter ML, Scott AL. Draft genome of the filarial nematode parasite Brugia malayi. Science. 2007, 317, 1756-60 Flaus A, Martin DMA, Barton GJ, Owen-Hughes T Identification of multiple distinct Snf2 subfamilies with conserved structural motifs. Nucleic Acids Res. 2006, 34, 2887-905. Berriman M, Ghedin E, Hertz-Fowler C, Blandin G, Renauld H, Bartholomeu DC, Lennard NJ, Caler E, Hamlin NE, Haas B, Bohme U, Hannick L, Aslett MA, Shallom J, Marcello L, Hou L, Wickstead B, Alsmark UC, Arrowsmith C, Atkin RJ, Barron AJ, Bringaud F, Brooks K, Carrington M, Cherevach I, Chillingworth TJ, Churcher C, Clark LN, Corton CH, Cronin A, Davies RM, Doggett J, Djikeng A, Feldblyum T, Field MC, Fraser A, Goodhead I, Hance Z, Harper D, Harris BR, Hauser H, Hostetler J, Ivens A, Jagels K, Johnson D, Johnson J, Jones K, Kerhornou AX, Koo H, Larke N, Landfear S, Larkin C, Leech V, Line A, Lord A, Macleod A, Mooney PJ, Moule S, Martin DMA, Morgan GW, Mungall K, Norbertczak H, Ormond D, Pai G, Peacock CS, Peterson J, Quail MA, Rabbinowitsch E, Rajandream MA, Reitter C, Salzberg SL, Sanders M, Schobel S, Sharp S, Simmonds M, Simpson AJ, Tallon L, Turner CM, Tait A, Tivey AR, Van Aken S, Walker D, Wanless D, Wang S, White B, White O, Whitehead S, Woodward J, Wortman J, Adams MD, Embley TM, Gull K, Ullu E, Barry JD, Fairlamb AH, Opperdoes F, Barrell BG, Donelson JE, Hall N, Fraser CM, Melville SE, El-Sayed NM. The genome of the African trypanosome Trypanosoma brucei. Science 2005, 309 416-22 Byres E, Martin DMA, Hunter WN. A preliminary crystallographic analysis of the putative mevalonate diphosphate decarboxylase from Trypanosoma brucei Acta Crystallographica 2005, F61 581-584 Hill P, Burford D, Martin DMA, Flavell AJ. Retrotransposon populations of Vicia species with varying genome size. Molecular Genetics and Genomics 2005, 273 371-81 Martin DM, Berriman M, Barton GJ. GOtcha: a new method for prediction of protein function assessed by theannotation of seven genomes. BMC Bioinformatics. 2004, 5 178 Puntervoll P, Linding R, Gemund C, Chabanis-Davidson S, Mattingsdal M,Cameron S, Martin DM, Ausiello G, Brannetti B, Costantini A, Ferre F, Maselli V,Via A, Cesareni G, Diella F, Superti-Furga G, Wyrwicz L, Ramu C, McGuigan C,Gudavalli R, Letunic I, Bork P, Rychlewski L, Kuster B, Helmer-Citterich M,Hunter WN, Aasland R, Gibson TJ. ELM server: A new resource for investigating short functional sites in modulareukaryotic proteins. Nucleic Acids Res. 2003, 31 3625-30. Martin DM, Hill P, Barton GJ, Flavell AJ. Visual representation of database search results: the RHIMS Plot.Bioinformatics. 2003, 19 1037-8. Iliopoulos I, Tsoka S, Andrade MA, Enright AJ, Carroll M, Poullet P,Promponas V, Liakopoulos T, Palaios G, Pasquier C, Hamodrakas S, Tamames J,Yagnik AT, Tramontano A, Devos D, Blaschke C, Valencia A, Brett D, Martin D,Leroy C, Rigoutsos I, Sander C, Ouzounis CA. Evaluation of annotation strategies using an entire genome sequence. Bioinformatics. 2003, 19 717-26. Gardner MJ, Hall N, Fung E, White O, Berriman M, Hyman RW, Carlton JM, PainA, Nelson KE, Bowman S, Paulsen IT, James K, Eisen JA, Rutherford K, SalzbergSL, Craig A, Kyes S, Chan MS, Nene V, Shallom SJ, Suh B, Peterson J, Angiuoli S,Pertea M, Allen J, Selengut J, Haft D, Mather MW, Vaidya AB, Martin DM, FairlambAH, Fraunholz MJ, Roos DS, Ralph SA, McFadden GI, Cummings LM, Subramanian GM,Mungall C, Venter JC, Carucci DJ, Hoffman SL, Newbold C, Davis RW, Fraser CM,Barrell B. Genome sequence of the human malaria parasite Plasmodium falciparum.Nature. 2002, 419 498-511. Martin DM, Wiiger MT, Prydz H. Tissue factor and biotechnology.Thromb Res. 1998, 90 1-25. Ashton AW, Kemball-Cook G, Johnson DJ, Martin DM, O'Brien DP, Tuddenham EG,Perkins SJ. Factor VIIa and the extracellular domains of human tissue factor form a compactcomplex: a study by X-ray and neutron solution scattering.