B.S. Universidad Nacional Autonoma de Mexico (UNAM) Mathematics M.S. Virginia Polytechnic Institute and State University Mathematics Ph.D. Virginia Polytechnic Institute and State University Mathematics

The Minimal Hitting Set Generation Problem: Algorithms and ComputationAndrew Gainer-Dewar, Paola Vera-Licona SIAM Journal on Discrete Mathematics 2016 Oct;31(1):63–100 AlgoRun: a Docker-based packaging system for platform-agnostic implemented algorithms.Hosny, Abdelrahman; Vera-Licona, Paola; Laubenbacher, Reinhard; Favre, Thibauld Bioinformatics (Oxford, England) 2016 Aug;32(15):2396-8 QuIN: A Web Server for Querying and Visualizing Chromatin Interaction Networks.Thibodeau, Asa; Márquez, Eladio J; Luo, Oscar; Ruan, Yijun; Menghi, Francesca; Shin, Dong-Guk; Stitzel, Michael L; Vera-Licona, Paola; Ucar, Duygu PLoS computational biology 2016 Jun;12(6):e1004809 An algebra-based method for inferring gene regulatory networks.Vera-Licona, Paola; Jarrah, Abdul; Garcia-Puente, Luis David; McGee, John; Laubenbacher, Reinhard BMC systems biology 2014 Mar;8(37):37 OCSANA: optimal combinations of interventions from network analysis.Vera-Licona, Paola; Bonnet, Eric; Barillot, Emmanuel; Zinovyev, Andrei Bioinformatics (Oxford, England) 2013 Jun;29(12):1571-3 TIGRESS: Trustful Inference of Gene REgulation using Stability Selection.Haury, Anne-Claire; Mordelet, Fantine; Vera-Licona, Paola; Vert, Jean-Philippe BMC systems biology 2012 Nov;6(145):145 Wisdom of crowds for robust gene network inference.Marbach, Daniel; Costello, James C; Küffner, Robert; Vega, Nicole M; Prill, Robert J; Camacho, Diogo M; Allison, Kyle R; Aderhold, Andrej; Allison, Kyle R; Bonneau, Richard; Camacho, Diogo M; Chen, Yukun; Collins, James J; Cordero, Francesca; Costello, James C; Crane, Martin; Dondelinger, Frank; Drton, Mathias; Esposito, Roberto; Foygel, Rina; de la Fuente, Alberto; Gertheiss, Jan; Geurts, Pierre; Greenfield, Alex; Grzegorczyk, Marco; Haury, Anne-Claire; Holmes, Benjamin; Hothorn, Torsten; Husmeier, Dirk; Huynh-Thu, Van Anh; Irrthum, Alexandre; Kellis, Manolis; Karlebach, Guy; Küffner, Robert; Lèbre, Sophie; De Leo, Vincenzo; Madar, Aviv; Mani, Subramani; Marbach, Daniel; Mordelet, Fantine; Ostrer, Harry; Ouyang, Zhengyu; Pandya, Ravi; Petri, Tobias; Pinna, Andrea; Poultney, Christopher S; Prill, Robert J; Rezny, Serena; Ruskin, Heather J; Saeys, Yvan; Shamir, Ron; S?rbu, Alina; Song, Mingzhou; Soranzo, Nicola; Statnikov, Alexander; Stolovitzky, Gustavo; Vega, Nicci; Vera-Licona, Paola; Vert, Jean-Philippe; Visconti, Alessia; Wang, Haizhou; Wehenkel, Louis; Windhager, Lukas; Zhang, Yang; Zimmer, Ralf; Kellis, Manolis; Collins, James J; Stolovitzky, Gustavo Nature methods 2012 Aug;9(8):796-804 Discretization of time series data.Dimitrova, Elena S; Licona, M Paola Vera; McGee, John; Laubenbacher, Reinhard Journal of computational biology : a journal of computational molecular cell biology 2010 Jun;17(6):853-68 Inference of ecological networksVera-Licona P., and Laubenbacher R Annales Zoologici Fennici 2008 Oct;45(5):459-464 Model your genes the mathematical way: a mathematical biology workshop for secondary school teachersMartins A., Vera-Licona P. and Laubenbacher R Teaching Mathematics and its Applications 2008 Jan;27(2):91-101 Comparison of reverse-engineering methods using an in silico network.Camacho, Diogo; Vera Licona, Paola; Mendes, Pedro; Laubenbacher, Reinhard Annals of the New York Academy of Sciences 2007 Dec;111573-89